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    Home » All Recipes » Healthy Homemade Snacks

    Almond Thyme Savoury Sweet Potato Muffins (WFPB, GF)

    updated: May 13, 2025

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    The contents of this article are human-created.
    This post may contain affiliate links. Please see my full disclosure for details
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    These Almond Thyme Savoury Sweet Potato Muffins make a delicious, fibre-rich breakfast, snack or side. Made with simple whole-food ingredients and no added sugars, they are naturally oil-free, paleo-friendly, gluten-free and plant-based.

    Four Sweet Potato Muffins staggered in a row with toasted almonds and thyme sprinkled on top.

    *Nutrition Disclaimer: The health, fitness and nutritional information provided on this site is designed for educational purposes only. You should not rely on this information as a substitute for, nor does it replace, professional medical advice, diagnosis, or treatment. Please read our disclaimers page for more information.

    Thanks to a blend of warming spices, fresh thyme and a crunchy almond topping, these Savoury Sweet Potato Muffins are bursting with flavour! Not to mention, they are just the right texture. They are melt-in-your-mouth fluffy with tops that offer a touch of crunch.

    Of course, they are delicious with all the extras like cashew cheese, hummus or grass-fed ghee. However, the sweet potato provides a buttery moistness that makes them just as delectable on their own. Plus, it makes them perfect for snacking on the go!

    A muffin tin filled with Almond Thyme Sweet Potato Muffins, cubed sweet potato and chopped almonds.

    Are Sweet Potato Muffins Healthy?

    Sweet potato is the star of this recipe, which offers a number of nutritional benefits. But, thyme, almonds, clove and nutmeg aren't far behind and are full of beneficial nutrients too!

    And as mentioned above, these Almond Thyme Sweet Potato Muffins are made with whole-food ingredients, contain no added sugars and are suitable for many dietary needs.

    Health Benefits

    Fibre-rich. Sweet potatoes are a great source of both insoluble and soluble fibre that can be beneficial to heart health and blood sugar balance. Just one muffin provides 4 grams of fibre, that's around 16% of a woman's recommended daily intake!

    Vitamin and mineral-rich. Sweet potato is rich in many vitamins and minerals, including vitamin C, manganese, copper and many B vitamins. 

    Immune-supporting. Thyme, nutmeg and clove are all known to contain antibacterial, antiviral and antifungal properties. These properties are wonderful at warding off seasonal pathogens.

    Antioxidant-rich. Between the carotenes and vitamin C in sweet potatoes, thyme's variety of flavonoids, plus the richness of manganese, these Savoury Muffins are an excellent source of antioxidants.

    Sensitivity-friendly. With no added sugar and minimal whole-food ingredients, these Muffins are gluten-free, dairy-free, WFPB, and paleo-friendly.

    Seasonal Benefits

    Autumn and winter are the best seasons to enjoy the warmth and nourishment these muffins provide. Autumn is also an ideal time to utilize fresh, seasonal sweet potatoes. Plus, they make a delicious side or starter for Thanksgiving dinner.

    Spring is also a great time to reap the immune-supporting properties of these savoury muffins.

    How to Make Savoury Sweet Potato Muffins

    These Almond Thyme Sweet Potato Muffins whip up with just a few simple steps and minimal whole food ingredients! Follow the steps below or watch the video.

    A sweet potato muffin sitting on a plate in front of a full muffin tin and a bowl of chopped almonds.

    What You Will Need

    Equipment

    • Oven to bake the muffins.
    • Muffin tin to hold and shape the muffins.
    • Mixing bowl to combine the ingredients.
    • Potato masher to mash the sweet potato.
    • Wooden spoon or spatula to stir the ingredients.
    • Measuring utensils for accuracy.

    Ingredients

    • Sweet potato is the main ingredient in these muffins, offering a sweet and earthy flavour and a deliciously soft and moist texture. You can also use pre-made sweet potato purée.
    • Almond flour helps to bind the muffins and create a soft and fluffy texture.
    • Arrowroot flour acts as a natural binding agent that helps hold these gluten-free muffins together.
    • Homemade unsweetened almond milk contributes to the moisture and soft texture.
    • Apple cider vinegar acts as a leavening agent, reacting with the baking soda to create a fluffy texture.
    • Baking soda serves as a leavening agent, contributing to a fluffy texture.
    • Baking powder also helps give these muffins a little extra rise.
    • Fresh thyme adds a fresh herbaceous flavour that balances out the earthy flavours of sweet potato, warming spices.
    • Raw almonds add a delicious crunchy topping while adding to the savoury flavour.
    • Warming spices complement the sweet and earthy flavour of sweet potato.
    A muffin tin full of freshly baked sweet potato muffins and cubed sweet potato.

    Step 1: Make Sweet Potato Purée

    First, preheat your oven to 350°F.

    For a single batch of this recipe, you will need 1 large sweet potato or 2 - 3 if they are smaller (approximately 1 pound). 

    Slice your sweet potato(s) in half and place face-down on a parchment-lined baking sheet. With a fork, poke holes into the skin of the sweet potato to allow the release of steam while cooking.

    Bake the sweet potato for 35 - 40 minutes. Or until juices begin to release and the sweet potato is tender.

    A pan of freshly baked sweet potato halves, oozing with juices.

    Once the sweet potato is cooked, remove from the oven and allow to cool.

    Once cool, scrape the sweet potato out of the skins and into a clean bowl. Use a potato masher, immersion blender or a fork to mash it into a purée.

    Set aside while you begin to prepare the batter. This is a great step to make ahead of time!

    The process of sweet potato after being scraped out of skins and after being mashed into a purée.

    Step 2: Prepare the Muffin Batter

    In a large bowl, combine the almond flour, arrowroot flour, baking powder and baking soda. Then, stir in the ground nutmeg, coriander, cloves and salt.

    The process mixing the dry ingredients in sweet potato muffins.

    Mix well with a whisk to remove any large clumps. Then, stir in the chopped fresh thyme (or dried).

    Next, add the sweet potato purée, apple cider vinegar and unsweetened almond milk.

    Mix well and keep folding the mixture until it forms into a fluffy batter. Then scoop the batter into a lined muffin tin. Don't be afraid to fill your muffin cups to the top, as these muffins only rise a little bit.

    The process of sweet potato muffin batter being mixed.

    Step 3: Add Crunchy Almond Thyme Topping

    Just one more step before baking! Now that your batter is made and placed in your muffin cups, it's time (or should I say thyme) to add the crunchy topping!

    If your almonds aren't already chopped, chop up a handful of raw almonds into small slices and bits. It is easiest to do this with a large chef's knife. If you do not have a large or sharp enough knife to chop your almonds safely, you can always give them a quick zip in a food processor or blender.

    Sprinkle the chopped almonds on top of each muffin with a few sprigs of fresh thyme.

    A muffin tin filled with muffin batter topped with chopped almonds and fresh thyme.

    Step 4: Bake

    After sprinkling your muffin tops with chopped almonds and fresh thyme, place them in a preheated oven at 350°F. Bake for 30 - 35 minutes, or until muffin tops begin to brown and the almonds are toasted.

    To make sure they are fully cooked, slide a fork or a toothpick into the centre of one of the muffins and pull it back out. If it comes out clean, they are done. However, if there is any sticky or wet batter on the toothpick, they will need to bake for a few minutes longer.

    Once your muffins are fully cooked, remove them from the oven and let them stand for a few minutes before serving or handling.

    A muffin tin full of freshly baked sweet potato muffins.

    Substitutions & Variations

    Any milk that is unsweetened and unflavoured can be substituted for the unsweetened almond milk.

    Canned sweet potato purée can be used as an alternative to making your own.

    Pumpkin purée can be used as a substitute for sweet potato.

    Dried thyme can be used in place of fresh. Use 2 teaspoon for a single batch of this recipe.

    My Top Tips

    • Use organic ingredients to minimize exposure to harmful pesticides and herbicides.
    • Lightly mix the batter after the sweet potato and liquids are added to create a fluffier texture. Overmixing can cause the muffins to have a denser texture.

    How to Serve Savoury Sweet Potato Muffins

    As mentioned above, these Almond Thyme Sweet Potato Muffins are perfectly moist, fluffy and full of flavour! They are delicious on their own, making them great for breakfast, a midday snack or serving with holiday and roast dinners.

    However, they are also incredibly yummy warmed up and topped with cashew cheese, yogurt and chives, hummus or a little grass-fed butter.

    A sweet potato muffin sliced in half, baring a fluffy centre.

    Storing & Saving

    These Homemade Savoury Sweet Potato Muffins will keep in the fridge for up to 7 days if they are sealed in an airtight container.

    They can also be frozen for up to 3 months. To keep them separated, they can be wrapped in unbleached parchment paper before freezing. Allow them to fully cool before sealing and storing.

    Recipe Highlights

    Warming. With a touch of warming spices, these muffins are perfect for autumn, winter and holiday dinners.

    Great source of fibre. These muffins are rich in fibre that can contribute to heart health and blood sugar balance.

    Friendly for many diets. These muffins are free of gluten, dairy, added sugar and oil, making them a suitable option for many dietary restrictions.

    Nutrient-dense. These muffins are rich in many nutrients, including antioxidants, vitamins, minerals and antimicrobial properties.

    More Warming Recipes

    • Spicy Sweet Potato Corn Chowder (Healthy & Vegan)
    • Grain-Free Flatbread
    • Easy Homemade Pumpkin Purée
    • Easy Almond Flour Chocolate Chip Cookies (Vegan, GF)
    • Simple Oven Roasted Pumpkin Seeds
    Sweet Potato Muffins laying in a staggered row sprinkled with toasted almonds, thyme and surrounded by crumbs.

    If you make these Almond Thyme Savoury Sweet Potato Muffins, let me know how they turn out by leaving a comment and rating below. Also, make sure you're following along on Pinterest, Instagram, Facebook and Flipboard for more wildly nutritious recipes!

    Sweet Potato Muffins laying in a staggered row sprinkled with toasted almonds, thyme and surrounded by crumbs.

    Almond Thyme Savoury Sweet Potato Muffins (WFPB, GF)

    Recipe By : Michelle McCowan
    5 from 1 vote
    Print Recipe
    These Almond Thyme Savoury Sweet Potato Muffins make a delicious, fibre-rich breakfast, snack or side. Made with simple whole-food ingredients and no added sugars, they are naturally oil-free, paleo-friendly, gluten-free and plant-based.
    Prevent your screen from going dark
    Pin Recipe Rate Recipe Watch Video
    Prep Time 50 minutes mins
    Cook Time 35 minutes mins
    Total Time 1 hour hr 25 minutes mins
    Dietary DF, GF, Oil Free, Soy Free
    Season(s) Autumn, Spring, Winter
    Difficulty Moderate
    Yield 12 Muffins

    Equipment

    • Muffin Tin
    • Muffin Cups
    • Potato Masher or Immersion Blender
    • Oven

    Ingredients
      

    • 1 lb Sweet Potato (or 1 cup Sweet Potato Purée - Packed)
    • 2 cups Almond Flour
    • ½ cup Arrowroot Flour
    • 2 teaspoon Baking Powder
    • 1 teaspoon Baking Soda
    • 1 teaspoon Pink Himalayan Salt (or Other Natural Mineral Salt)
    • 1 teaspoon Ground Nutmeg
    • 1 teaspoon Ground Coriander
    • ¼ teaspoon Ground Cloves
    • 2 tablespoon Fresh Thyme - Plus extra for sprinking (or 2 teaspoon dried)
    • 1 teaspoon Apple Cider Vinegar
    • ⅓ cup Homemade Unsweetened Almond Milk (or Tigernut)
    • ¼ cup Raw Almonds (Chopped)

    Instructions
     

    Homemade Sweet Potato Purée

    • First, preheat your oven to 350°F.
      For a single batch of this recipe, you will need 1 large sweet potato or 2 - 3 if they are smaller (approximately 1 pound). 
    • Slice your sweet potato(s) in half and place face-down on a parchment-lined baking sheet. With a fork, poke holes into the skin of the sweet potato to allow the release of steam while cooking.
      Bake the sweet potato for 35 - 40 minutes. Or until juices begin to release and the sweet potato is tender.
    • Once the sweet potato is cooked, remove from the oven and allow to cool.
      Once cool, scrape the sweet potato out of the skins and into a clean bowl. Use a potato masher, immersion blender or a fork to mash it into a purée.
      Set aside while you begin to prepare the batter. This is a great step to make ahead of time! Refrigerate the sweet potato purée in an airtight container, if making in advance.

    Savoury Muffins

    • In a large bowl, combine the almond flour, arrowroot flour, baking powder and baking soda. Then, stir in the ground nutmeg, coriander, cloves and salt. Mix until well combined.
      Mix well with a whisk to remove any large clumps. Then, stir in the chopped fresh thyme (or dried).
      Next, add the sweet potato purée, apple cider vinegar and unsweetened almond milk.
      Mix well and keep folding the mixture until it forms into a fluffy batter. Then scoop the batter into a lined muffin tin. Don't be afraid to fill your muffin cups to the top, as these muffins only rise a little bit.
    • Just one more step before baking! Now that your batter is made and placed in your muffin cups, it's time (or should I say thyme) to add the crunchy topping!
      If your almonds aren't already chopped, chop up a handful of raw almonds into small slices and bits. It is easiest to do this with a large chef's knife. If you do not have a large or sharp enough knife to chop your almonds safely, you can always give them a quick zip in a food processor or blender.
      Sprinkle the chopped almonds on top of each muffin with a few sprigs of fresh thyme.
    • After sprinkling your muffin tops with chopped almonds and fresh thyme, place them in a preheated oven at 350°F. Bake for 30 - 35 minutes, or until muffin tops begin to brown and the almonds are toasted.
      To make sure they are fully cooked, slide a fork or a toothpick into the centre of one of the muffins and pull it back out. If it comes out clean, they are done. However, if there is any sticky or wet batter on the toothpick, they will need to bake for a few minutes longer.

    Notes

    Any milk that is unsweetened and unflavoured can be substituted for the unsweetened almond milk.
    Canned sweet potato purée can be used as an alternative to making your own. 
    Pumpkin purée can be used as a substitute for sweet potato.
    Use organic ingredients to minimize exposure to harmful pesticides and herbicides.
    Lightly mix the batter after the sweet potato and liquids are added to create a fluffier texture. Overmixing can cause the muffins to have a denser texture.
    To store these Muffins, allow them to cool fully before sealing them in an airtight container. They can be refrigerated for up to 7 days or frozen for up to 3 months.

    Watch the Video!

    Nutrition

    Serving: 1muffin | Calories: 201kcal | Carbohydrates: 18g | Protein: 6g | Fat: 13g | Saturated Fat: 2g | Polyunsaturated Fat: 1g | Monounsaturated Fat: 2g | Trans Fat: 1g | Sodium: 378mg | Potassium: 189mg | Fiber: 4g | Sugar: 2g | Vitamin A: 5418IU | Vitamin C: 3mg | Calcium: 113mg | Iron: 2mg
    Total Servings : 12 muffins
    HAVE YOU TRIED THIS RECIPE?I’d love to know what you think! Leave a rating and comment to share how it turned out.

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    Posted by Michelle McCowan on June 1, 2022

    5 from 1 vote (1 rating without comment)

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    A woman preparing whole foods on a rustic table with fresh beets and beet greens.

    Welcome! I'm Michelle, a photographer and nutritionally trained recipe developer who believes in the power of real food, dancing to nature's rhythm, and tuning into our wild roots through simple, slow, and natural living. One of my greatest passions is creating tasty recipes that utilize whole foods and minimally processed ingredients, along with sharing easy-to-digest information that simplifies healthy eating, home cooking, and natural wellness.

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